Hello everyone,
I have noticed this problems and I don't know if it's just me or bugs. I'm running latest version 0.9.8.11 fresh installed.
Updating php.ini from user panel, update and save changes but php.ini file become chmoded root 0000/root 0000 (user/group) and become transparent in directory. Adding rules from user panel to php.ini works ok if it's fresh created but do not chmod to user/group if it was modified with update button before. I mean it's not corrected to current user/group.
Also php.ini do not work recursively into directories. So in my case php.ini is read and work only for root directory but not on subdirectories and it as correct user/group.
Regards, Jean.