Hi, Just letting you know that we ran into the same issue at
Carbon Hosting for a client.
We had the issue with Comodo EV.
Even after following this guide at
https://www.namecheap.com/support/knowledgebase/article.aspx/9771/2238/apache-error-x509checkprivatekeykey-values-mismatchMy solution was to take the web server back to only Apache. (It was Apache, Nginx, Varnish)
Install the cert using the /admin/index.php?module=ssl_certificate "Manual Install"
I copied in the cert and private key, clicked on generate Intermediate certificates.
Checking that this worked, rebuild the server as Apache, Nginx, Varnish
Also you may want to edit the master vhost template to remove TLSv1 (/admin/index.php?module=vhost_tpl)
CWP Configuration Templates for nginx_proxy_vhost_sslssl_protocols TLSv1.2;
ssl_ciphers 'ECDHE-ECDSA-AES256-GCM-SHA384:ECDHE-RSA-AES256-GCM-SHA384:ECDHE-ECDSA-CHACHA20-POLY1305:ECDHE-RSA-CHACHA20-POLY1305:ECDHE-ECDSA-AES128-GCM-SHA256:ECDHE-RSA-AES128-GCM-SHA256:ECDHE-ECDSA-AES256-SHA384:ECDHE-RSA-AES256-SHA384:ECDHE-ECDSA-AES128-SHA256:ECDHE-RSA-AES128-SHA256';
ssl_prefer_server_ciphers on;
Save and rebuild the vhost
Now test your domain using
https://www.ssllabs.com/ssltest/analyze.htmlRegards
Carbon Hosting