I ran the cron job to update the server (sh /scripts/update_cwp) but when it went to update after downloading, it came up with errors for everything. I was logged in as root. I don't think any files were updated. This is the end of my log but this same error scrolled across the screen from the time it downloaded and unzipped.
error: cannot delete old admin/design/img/loaders/circular/064.gif
Permission denied
error: cannot delete old admin/design/img/loaders/circular/070.gif
Permission denied
error: cannot delete old admin/design/img/loaders/circular/041.gif
Permission denied
error: cannot delete old admin/design/img/loaders/circular/022.gif
Permission denied
error: cannot delete old admin/design/img/loaders/horizontal/045.gif
Permission denied
error: cannot delete old admin/design/img/loaders/horizontal/058.gif
Permission denied
error: cannot delete old admin/design/img/loaders/horizontal/031.gif
Permission denied
error: cannot delete old admin/design/img/loaders/horizontal/048.gif
Permission denied
error: cannot delete old admin/design/img/loaders/horizontal/006.gif
Permission denied
error: cannot delete old admin/design/img/loaders/horizontal/009.gif
Permission denied
error: cannot delete old admin/design/img/loaders/horizontal/037.gif
Permission denied
error: cannot delete old admin/design/img/loaders/horizontal/043.gif
Permission denied
error: cannot delete old admin/design/img/loaders/horizontal/063.gif
Permission denied
error: cannot delete old admin/design/img/loaders/horizontal/036.gif
Permission denied
error: cannot delete old admin/design/img/loaders/horizontal/053.gif
Permission denied
error: cannot delete old admin/design/img/loaders/horizontal/018.gif
Permission denied
error: cannot delete old admin/design/img/loaders/horizontal/004.gif
Permission denied
error: cannot delete old admin/design/img/loaders/horizontal/057.gif
Permission denied
error: cannot delete old admin/design/img/loaders/horizontal/024.gif
Permission denied
error: cannot delete old admin/design/img/loaders/horizontal/014.gif
Permission denied
error: cannot delete old admin/design/img/loaders/horizontal/032.gif
Permission denied
error: cannot delete old admin/design/img/loaders/horizontal/005.gif
Permission denied
error: cannot delete old admin/design/img/loaders/horizontal/062.gif
Permission denied
error: cannot delete old admin/design/img/thumbs-up.jpg
Permission denied
error: cannot delete old admin/design/img/online.gif
Permission denied
error: cannot delete old admin/design/img/offline.png
Permission denied
Thanks in advance; hopefully people will be on the lookout for this if they run the cron job to update the server version. The only reason I was using the corn was because the Dashboard Interface was timing out with a 504 error.